Index

A

accumulate_detections() (in module spcal.detection) accumulation threshold

agglomerative_cluster() (in module spcal.cluster) apply_autoblanking() (in module spcal.io.nu) atoms_per_particle() (in module spcal.particle)

B

background_mask() (in module spcal.detection)

blanking_regions_from_autob() (in module spcal.io.nu)

C

calibrate_index_to_mass() (in module spcal.io.tofwerk) calibrate_mass_to_index() (in module spcal.io.tofwerk) cdf() (in module spcal.dists.lognormal) (in module spcal.dists.normal) (in module spcal.dists.poisson)

cell_concentration() (in module spcal.particle) cluster_information() (in module spcal.cluster) combine_regions() (in module spcal.detection) compound_poisson_lognormal_quantile_approximation() (in module spcal.dists.util) compound_poisson_lognormal_quantile_lookup() (in module spcal.dists.util) currie() (in module spcal.poisson)

D

dataForExpression() (spcal.datafile.SPCalDataFile method) dataForIsotope() (spcal.datafile.SPCalDataFile method) (spcal.datafile.SPCalNuDataFile method) (spcal.datafile.SPCalTextDataFile method) (spcal.datafile.SPCalTOFWERKDataFile method)

density detection threshold detection_maxima() (in module spcal.detection) diameter

E

erf() (in module spcal.dists.normal) erfinv() (in module spcal.dists.normal) error rate event time event_time (spcal.datafile.SPCalDataFile property) (spcal.datafile.SPCalNuDataFile property) (spcal.datafile.SPCalTOFWERKDataFile property)

eventtime_from_info() (in module spcal.io.nu) exclusion_regions (spcal.datafile.SPCalDataFile attribute) expand_mask() (in module spcal.calc) extract_compound_poisson_lognormal_parameters() (in module spcal.dists.util) extract_compound_poisson_lognormal_parameters_iterative() (in module spcal.dists.util)

F

formula_a() (in module spcal.poisson)

formula_c() (in module spcal.poisson)

G

generateIsotopeTable() (spcal.datafile.SPCalNuDataFile method)

guess_text_parameters() (in module spcal.io.text)

I

indicies_from_integ() (in module spcal.io.nu) integrate_tof_data() (in module spcal.io.tofwerk) interpolate_3d() (in module spcal.calc) ionic response is_integer_or_near() (in module spcal.calc) is_nu_directory() (in module spcal.io.nu) is_nu_run_info_file() (in module spcal.io.nu) is_text_file() (in module spcal.io.text) is_tofwerk_file() (in module spcal.io.tofwerk)

iso_time_to_float_seconds() (in module spcal.io.text) isotope expression isotope_table (spcal.datafile.SPCalNuDataFile attribute) (spcal.datafile.SPCalTOFWERKDataFile attribute) isotopes (spcal.datafile.SPCalDataFile property) (spcal.datafile.SPCalNuDataFile property) (spcal.datafile.SPCalTextDataFile property) (spcal.datafile.SPCalTOFWERKDataFile property) isTOF() (spcal.datafile.SPCalDataFile method) (spcal.datafile.SPCalTextDataFile method)

L

load() (spcal.datafile.SPCalNuDataFile class method) (spcal.datafile.SPCalTextDataFile class method) (spcal.datafile.SPCalTOFWERKDataFile class method)

M

mass fraction mass response masses (spcal.datafile.SPCalDataFile property) (spcal.datafile.SPCalNuDataFile property) (spcal.datafile.SPCalTextDataFile property) (spcal.datafile.SPCalTOFWERKDataFile property) masses_from_integ() (in module spcal.io.nu) mode() (in module spcal.calc) module spcal.calc spcal.cluster spcal.datafile spcal.detection spcal.dists.lognormal spcal.dists.normal spcal.dists.poisson spcal.dists.util spcal.io.nu spcal.io.text spcal.io.tofwerk spcal.isotope spcal.limit spcal.particle spcal.poisson

molar mass

N

nebulisation_efficiency_from_mass() (in module spcal.particle) nebulisation_efficiency_from_mass_concentration() (in module spcal.particle) nebulisation_efficiency_from_number_concentration() (in module spcal.particle)

num_events (spcal.datafile.SPCalDataFile property) (spcal.datafile.SPCalNuDataFile property) (spcal.datafile.SPCalTextDataFile property) (spcal.datafile.SPCalTOFWERKDataFile property)

O

otsu() (in module spcal.calc)

P

particle_mass() (in module spcal.particle) particle_number_concentration() (in module spcal.particle) particle_size() (in module spcal.particle) particle_total_concentration() (in module spcal.particle) pca() (in module spcal.calc)

pdf() (in module spcal.dists.lognormal) (in module spcal.dists.normal) (in module spcal.dists.poisson) preferred_isotopes (spcal.datafile.SPCalDataFile property) prepare_data_for_clustering() (in module spcal.cluster) prepare_results_for_clustering() (in module spcal.cluster)

Q

quantile() (in module spcal.dists.lognormal) (in module spcal.dists.normal) (in module spcal.dists.poisson)

R

read_autob_binary() (in module spcal.io.nu) read_binaries_in_index() (in module spcal.io.nu) read_directory() (in module spcal.io.nu) read_integ_binary() (in module spcal.io.nu) read_single_particle_file() (in module spcal.io.text)

read_tofwerk_file() (in module spcal.io.tofwerk) reference_particle_mass() (in module spcal.particle) replace_comma_decimal() (in module spcal.io.text) required points required prominence

S

search_sorted_closest() (in module spcal.calc) select_nu_signals() (in module spcal.io.nu) selected_isotopes (spcal.datafile.SPCalDataFile property) signals (spcal.datafile.SPCalDataFile property) (spcal.datafile.SPCalNuDataFile property) (spcal.datafile.SPCalTextDataFile property) (spcal.datafile.SPCalTOFWERKDataFile property) signals_from_integs() (in module spcal.io.nu) single ion area spcal.calc module spcal.cluster module spcal.datafile module spcal.detection module spcal.dists.lognormal module spcal.dists.normal module spcal.dists.poisson module spcal.dists.util module

spcal.io.nu module spcal.io.text module spcal.io.tofwerk module spcal.isotope module spcal.limit module spcal.particle module spcal.poisson module SPCalDataFile (class in spcal.datafile) SPCalIsotope (class in spcal.isotope) SPCalIsotopeBase (class in spcal.isotope) SPCalIsotopeExpression (class in spcal.isotope) SPCalNuDataFile (class in spcal.datafile) SPCalTextDataFile (class in spcal.datafile) SPCalTOFWERKDataFile (class in spcal.datafile) spectra() (spcal.datafile.SPCalDataFile method) standard_quantile() (in module spcal.dists.normal) stapleton_approximation() (in module spcal.poisson) sum_iid_lognormals() (in module spcal.dists.util)

T

times_from_integs() (in module spcal.io.nu)

total_time (spcal.datafile.SPCalDataFile property) transport efficiency

U

uptake

W

weighted_linreg() (in module spcal.calc)

weighted_rsq() (in module spcal.calc) weights_from_weighting() (in module spcal.calc)

Z

zero_trunc_quantile() (in module spcal.dists.util)